Scaffold Ga0211576_10001282

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10001282
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19295
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (78.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F010910	Metagenome / Metatranscriptome	297	Y
F032992	Metagenome	178	Y
F093724	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000128239	F000325	GGAG	MKTANGNDKLGKEKCIVVSRPVGDTCPPSCDFLGNGCYAEQLEKIYPGVRPAGMQNLITEKNKIRAMIVNAEKKDKSIRWHERGDFYKNGSELDVEYVDNIVWACESILASGGNLPDMWFYTHIYDSRLVSLDKYMAVYASVHNAQNVLDAKAVGFKLFAWCDSDEKIATKRPRGKVKAQEWRDSLPKLVVLGEEKYITCPEIRRGRGVVTCTPTKNSVACNLCVKGLGNVLFPSH
Ga0211576_1000128246	F032992	GGA	MNNAMDPNFRYYDCKNIVDEITGEEQDNLTIMVAVPRIDLNTPEDRQENIVAISGVVEQQYRNGVQSFTYEEYKGE
Ga0211576_1000128247	F093724	AGAAG	MDMPYYFDEFPTEDIQMWVRECGKDIPKAKLRGDLTELEILENVVRSGSKELLKRYRDEK
Ga0211576_1000128249	F010910	GGAG	MLTIYTIFGMMIGFEGYDNGKVYFGVYTPNCEYGYVITPEEIYLDTIYEKK