Scaffold Ga0211576_10000117

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10000117
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67369
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (29.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002876	Metagenome / Metatranscriptome	524	Y
F040584	Metagenome	161	Y
F089561	Metagenome / Metatranscriptome	109	Y
F098264	Metagenome / Metatranscriptome	104	Y
F106117	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000011728	F089561	N/A	MAYLITTYLEDIPHAIIPNPSAKRFELIPIVKDSQVSKAFCSPNKTGAMSILNWINDNDTELASKNLSVQPEAKFFC
Ga0211576_1000011732	F106117	N/A	MLSFESSPEEEFWKVKMERAIEDCNSVYELKQIATMLVKLAATRQCVIKGLVRDSLDRMESELRVSSE
Ga0211576_1000011737	F098264	GAG	MNSKNYEEHIYYILDHFTKGGTPLPALIGNKLEWQVTTLVAGLLANEHVSTGLEAEQIVDAAINYVNIIQQRLGHYQNAKINSLEGLLDKN
Ga0211576_1000011765	F002876	N/A	MACKKSELVSAINSFGAARSTGDQNLVAFSGRLIGELLEDLNFDPEDEPTSEAETSDNQSEQSS
Ga0211576_1000011784	F040584	N/A	MNKGGSYVVGKPKKTKQGSGKHSRPNHGRKKLRGQGK