Scaffold Ga0211576_10000034

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10000034
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 109556
• Total Scaffold Genes: 118
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (69.49%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012114	Metagenome	283	Y
F019646	Metagenome	228	Y
F030051	Metagenome	186	Y
F076077	Metagenome	118	N
F093848	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_10000034109	F076077	AGGA	MFTEQEKLEITIDGLRNGDIFMSEDGIPVDECGDPIFEDDKK
Ga0211576_10000034112	F019646	N/A	MLNNNFEIVYSSDCCGASVHSDADICPTCYEHCEVIEDRTDFDCSEAVHFESSLDFHGAG
Ga0211576_10000034113	F012114	AGGAG	MSNNNCVVYPRKNVWAVIDLQGNKIGEVGAMTETEARQKVADHVIIPFTLSHIEE
Ga0211576_10000034115	F093848	GAG	MTQESMLTMNELIEKNLYDILDKLSTRLVQMYYVSCWETDDKDGMRVADNILHCRNFYNE
Ga0211576_1000003428	F030051	AGG	MADPNTLGHFFESFTTHMASVVLALIGFWTGFVRNLVNRKEVEQMIASQSQSSQYSKDRQFIMERLNSHKEDTSILFRALEKNTEVMTELKIQIATLGKTLEALENSIER