Scaffold Ga0211708_10143893

Overview

Basic Information

• Taxon OID: 3300020436
• Scaffold ID: Ga0211708_10143893
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 946
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092030	Metagenome / Metatranscriptome	107	Y
F105869	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211708_101438931	F092030	N/A	INQLDLGSLPLVNPDKYVEDPNSPAYNKLSPGVALANKEAEAMAEDKTSFVWDTTASNPKKIDLFLNKGYDVYMVMVYSHPVIAYISNAKRQRRVPSSAVFSTWRNVYKLIENYNKKLKGNLSIFINDRGGEFSEYVEEFNTAAKNGAAGISDYLERLNDKLNLEVGSTFRDPIQLSKVEQEEFYKAVKDIDYDTENYGEDRALKSYFQKMYQKNDLPPGDDQLKKALDSYRKRKISDAERAKDVLDDIADTVYDPVFLEKLQHSSVAEIDKNVQNFLA
Ga0211708_101438932	F105869	N/A	MATALYPGGFKPPHRGHFEVVKKLLSGTHNGKVYN