NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105869

Metagenome / Metatranscriptome Family F105869

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105869
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 44 residues
Representative Sequence MIALYPGAFKPPHRGHFEVVKSLLNGSHGGQVYNKDNYK
Number of Associated Samples 92
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 3.19 %
% of genes near scaffold ends (potentially truncated) 90.00 %
% of genes from short scaffolds (< 2000 bps) 90.00 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (81.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater
(19.000 % of family members)
Environment Ontology (ENVO) Unclassified
(52.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 19.40%    β-sheet: 0.00%    Coil/Unstructured: 80.60%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF06414Zeta_toxin 17.00
PF01930Cas_Cas4 2.00
PF13362Toprim_3 1.00
PF00873ACR_tran 1.00
PF06737Transglycosylas 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG1468CRISPR/Cas system-associated exonuclease Cas4, RecB familyDefense mechanisms [V] 2.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A81.00 %
All OrganismsrootAll Organisms19.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000928|OpTDRAFT_10264411Not Available922Open in IMG/M
3300001460|JGI24003J15210_10095752All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium861Open in IMG/M
3300001936|GOS2220_1021551All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1820Open in IMG/M
3300003216|JGI26079J46598_1033398All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1155Open in IMG/M
3300003617|JGI26082J51739_10059533Not Available1132Open in IMG/M
3300004097|Ga0055584_101490580Not Available702Open in IMG/M
3300004448|Ga0065861_1170914Not Available580Open in IMG/M
3300005605|Ga0066850_10287058Not Available582Open in IMG/M
3300006165|Ga0075443_10399324Not Available515Open in IMG/M
3300006484|Ga0070744_10126317Not Available736Open in IMG/M
3300006621|Ga0101441_100401Not Available113607Open in IMG/M
3300006793|Ga0098055_1159544Not Available866Open in IMG/M
3300006870|Ga0075479_10195396Not Available814Open in IMG/M
3300006916|Ga0070750_10335029Not Available641Open in IMG/M
3300006925|Ga0098050_1110075Not Available701Open in IMG/M
3300007344|Ga0070745_1191559Not Available759Open in IMG/M
3300009001|Ga0102963_1188398All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium825Open in IMG/M
3300009027|Ga0102957_1338025Not Available555Open in IMG/M
3300009086|Ga0102812_10564032Not Available623Open in IMG/M
3300009086|Ga0102812_10571353Not Available619Open in IMG/M
3300009606|Ga0115102_10252145Not Available594Open in IMG/M
3300010149|Ga0098049_1100963Not Available903Open in IMG/M
3300010149|Ga0098049_1276111Not Available509Open in IMG/M
3300010318|Ga0136656_1162836Not Available759Open in IMG/M
3300012954|Ga0163111_11172242Not Available749Open in IMG/M
3300017710|Ga0181403_1121156Not Available546Open in IMG/M
3300017714|Ga0181412_1071855Not Available843Open in IMG/M
3300017719|Ga0181390_1158715Not Available564Open in IMG/M
3300017731|Ga0181416_1063911Not Available870Open in IMG/M
3300017739|Ga0181433_1007097All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3186Open in IMG/M
3300017740|Ga0181418_1086002Not Available765Open in IMG/M
3300017740|Ga0181418_1098983Not Available707Open in IMG/M
3300017742|Ga0181399_1009385All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2894Open in IMG/M
3300017743|Ga0181402_1033702Not Available1420Open in IMG/M
3300017744|Ga0181397_1191651Not Available513Open in IMG/M
3300017745|Ga0181427_1020064All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1669Open in IMG/M
3300017779|Ga0181395_1096276All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium950Open in IMG/M
3300018428|Ga0181568_10567890Not Available897Open in IMG/M
3300019077|Ga0188868_1000348All Organisms → Viruses → Predicted Viral1454Open in IMG/M
3300020175|Ga0206124_10180718Not Available839Open in IMG/M
3300020188|Ga0181605_10316609Not Available648Open in IMG/M
3300020191|Ga0181604_10369158Not Available629Open in IMG/M
3300020436|Ga0211708_10143893All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium946Open in IMG/M
3300020438|Ga0211576_10660561Not Available515Open in IMG/M
3300020440|Ga0211518_10227655Not Available905Open in IMG/M
3300020474|Ga0211547_10377108Not Available715Open in IMG/M
3300021347|Ga0213862_10142827All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium842Open in IMG/M
3300021957|Ga0222717_10418773Not Available737Open in IMG/M
3300021962|Ga0222713_10493302Not Available734Open in IMG/M
3300022068|Ga0212021_1109010Not Available567Open in IMG/M
3300022074|Ga0224906_1175541Not Available594Open in IMG/M
3300022198|Ga0196905_1154553Not Available589Open in IMG/M
3300022921|Ga0255765_1190598All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium919Open in IMG/M
3300023170|Ga0255761_10303789Not Available834Open in IMG/M
3300023568|Ga0228696_1008637Not Available1178Open in IMG/M
3300023693|Ga0232112_1023720Not Available684Open in IMG/M
3300023702|Ga0232119_1005925All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 4572_771874Open in IMG/M
3300023702|Ga0232119_1013310All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1272Open in IMG/M
3300024228|Ga0228633_1034389Not Available1333Open in IMG/M
3300024228|Ga0228633_1057776All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium964Open in IMG/M
3300024229|Ga0233402_1064623Not Available770Open in IMG/M
3300024247|Ga0228675_1095332Not Available555Open in IMG/M
3300024266|Ga0228661_1069044Not Available657Open in IMG/M
3300024318|Ga0233400_1086654Not Available725Open in IMG/M
3300024335|Ga0228672_1096920Not Available833Open in IMG/M
3300024346|Ga0244775_10223038Not Available1576Open in IMG/M
3300024346|Ga0244775_10838575Not Available733Open in IMG/M
3300024346|Ga0244775_11206369Not Available589Open in IMG/M
3300025137|Ga0209336_10143218Not Available637Open in IMG/M
3300025138|Ga0209634_1317047Not Available528Open in IMG/M
3300025674|Ga0208162_1196642Not Available515Open in IMG/M
3300025676|Ga0209657_1118234Not Available787Open in IMG/M
3300025770|Ga0209362_1091472Not Available1158Open in IMG/M
3300026138|Ga0209951_1126386Not Available516Open in IMG/M
3300026470|Ga0247599_1097155Not Available616Open in IMG/M
3300026495|Ga0247571_1035245All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1097Open in IMG/M
3300027197|Ga0208922_1040110Not Available808Open in IMG/M
3300027631|Ga0208133_1161992Not Available515Open in IMG/M
3300027751|Ga0208304_10157199Not Available834Open in IMG/M
3300027753|Ga0208305_10196267Not Available727Open in IMG/M
3300027757|Ga0208671_10296057Not Available571Open in IMG/M
3300027788|Ga0209711_10465316Not Available503Open in IMG/M
3300027808|Ga0209354_10404861Not Available530Open in IMG/M
3300027906|Ga0209404_10983461Not Available578Open in IMG/M
3300028008|Ga0228674_1112972Not Available937Open in IMG/M
3300028109|Ga0247582_1007499All Organisms → Viruses → Predicted Viral2386Open in IMG/M
3300028124|Ga0228621_1066939Not Available542Open in IMG/M
3300028196|Ga0257114_1255159Not Available623Open in IMG/M
3300028279|Ga0228613_1012979All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1907Open in IMG/M
3300028391|Ga0233394_1095060Not Available626Open in IMG/M
3300031519|Ga0307488_10656849Not Available600Open in IMG/M
3300031766|Ga0315322_10715247Not Available628Open in IMG/M
3300032047|Ga0315330_10363194All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium900Open in IMG/M
3300032088|Ga0315321_10796383Not Available537Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater19.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater14.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine10.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous7.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine7.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine6.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh6.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine6.00%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine5.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater4.00%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water3.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake2.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.00%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater1.00%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine1.00%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water1.00%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.00%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001936Marine microbial communities from Halifax, Nova Scotia, Canada - GS004EnvironmentalOpen in IMG/M
3300003216Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNAEnvironmentalOpen in IMG/M
3300003617Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNAEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300005605Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67EnvironmentalOpen in IMG/M
3300006165Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNAEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006621Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ07 time pointEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006870Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009002Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573EnvironmentalOpen in IMG/M
3300009027Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MGEnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009606Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010318Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNAEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300017710Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28EnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017731Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16EnvironmentalOpen in IMG/M
3300017739Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017745Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300018036Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019077Metatranscriptome of marine microbial communities from Baltic Sea - GS695_0p8EnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300020188Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041411US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020191Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020436Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020440Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)EnvironmentalOpen in IMG/M
3300020474Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)EnvironmentalOpen in IMG/M
3300021347Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022074Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)EnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022921Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaGEnvironmentalOpen in IMG/M
3300023170Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaGEnvironmentalOpen in IMG/M
3300023568Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 84R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023693Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 29R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023702Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 82R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024228Seawater microbial communities from Monterey Bay, California, United States - 41DEnvironmentalOpen in IMG/M
3300024229Seawater microbial communities from Monterey Bay, California, United States - 54DEnvironmentalOpen in IMG/M
3300024247Seawater microbial communities from Monterey Bay, California, United States - 36D_rEnvironmentalOpen in IMG/M
3300024266Seawater microbial communities from Monterey Bay, California, United States - 75DEnvironmentalOpen in IMG/M
3300024318Seawater microbial communities from Monterey Bay, California, United States - 46DEnvironmentalOpen in IMG/M
3300024335Seawater microbial communities from Monterey Bay, California, United States - 90DEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025676Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025701Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025770Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026138Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026470Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 73R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026495Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 24R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027197Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743 (SPAdes)EnvironmentalOpen in IMG/M
3300027631Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)EnvironmentalOpen in IMG/M
3300027751Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)EnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300027757Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes)EnvironmentalOpen in IMG/M
3300027788Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)EnvironmentalOpen in IMG/M
3300027808Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028008Seawater microbial communities from Monterey Bay, California, United States - 1D_rEnvironmentalOpen in IMG/M
3300028109Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 41R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028124Seawater microbial communities from Monterey Bay, California, United States - 25DEnvironmentalOpen in IMG/M
3300028196Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10mEnvironmentalOpen in IMG/M
3300028279Seawater microbial communities from Monterey Bay, California, United States - 14DEnvironmentalOpen in IMG/M
3300028391Seawater microbial communities from Monterey Bay, California, United States - 24DEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031766Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515EnvironmentalOpen in IMG/M
3300032047Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915EnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
OpTDRAFT_1026441123300000928Freshwater And MarineMIALYPGAYKPPHRGHFNVVKSLLDNSYNGSVYDKD
JGI24003J15210_1009575213300001460MarineMIALYPGAFKPPHRGHFEVVKGLLNGSHGGQVYDIDSYAEAGTSVLQGKKNNVKKIN
GOS2220_102155123300001936MarineMIALYPGAFKPPHRGHFEVVKSLLNGNHGGKVYDIESYIDAGTSVLQGSGDELEKINNG
JGI26079J46598_103339813300003216MarineMRSVLYPGAFKPPHRGHFEVVKRLLNNNHGGHPYNVDTTYDAGTDALGGKESTAE
JGI26082J51739_1005953323300003617MarineMRSVLYSGAFKPPHRGHFEVVKRLLNNTHGGQPYDIDSHKEAGTSALS
Ga0055584_10149058013300004097Pelagic MarineMIALYPGAFKPPHRGHFEVVKRLLNGTHKGKVYDIEDYQDAGLKALS
Ga0065861_117091423300004448MarineMTALYPGAFKPPHRGHFEVVKSLLNGSHGGQVYNKDNYKDAGTSSLSGKKGKVE
Ga0066850_1028705823300005605MarineMIALYPGAFKPPHRGHFNVVKSLLDGSYNGTTYNKDDYQDKASSLFK
Ga0075443_1039932423300006165MarineMAIALYPGAFKPPHKGHFEVAKLLLNGSYNGQVYN
Ga0070744_1012631713300006484EstuarineMIALYPGAFKPPHRGHFEVVKSLLNGSHGGQVYNKDNYK
Ga0101441_1004011863300006621Marine Surface WaterMIALYPGAFKPPHRGHFNVVKTLLDGSYNGAVYTKDDYKEKGAA
Ga0098055_115954413300006793MarineMIALYPGAFKPPHRGHFEVVKRLLKVNHGGHVYSIDNYQDAGTKA
Ga0075479_1019539623300006870AqueousMIALYPGAFKPPHRGHFNVVKTLLDGSYNGAVYTKDDYK
Ga0070750_1033502913300006916AqueousMIALYPGAFKPPHRGHFEVVKRLLNGTHKGEVYDIEDYQDAG
Ga0098050_111007523300006925MarineMIALYPGAFKPPHRGHFEVVKSLLNGTHGGQVYTKDNYKDAGTSSLTGKKSIVDKIDK
Ga0070745_119155923300007344AqueousMIALYPGAFKPPHRGHFEVVKSLLNGTHGGKIYNVDSYKQAGLGALSKE
Ga0102963_118839813300009001Pond WaterMIALYPGAYKPPHRGHFEVVKRLLNGTHKGKVYDIEDYQDA
Ga0102810_106757123300009002EstuarineMATALYPGGFKPPHRGHFEVVKKLLSNTHGGKLYNFDDREEA
Ga0102957_133802523300009027Pond WaterMIALYPGAYKPPHRGHFEVVKRLFNGTHKGKVYDIEDYQDAGLKALSSEESTAEKI
Ga0102812_1056403223300009086EstuarineMAVALYPGAFKPPHRGHFEVVKRLLKGTHDGKPYTLDNYKDVG
Ga0102812_1057135313300009086EstuarineMIALYPGAYKPPHRGHFNVVKSLLDGSYNGSVYNKDNYKETG
Ga0115102_1025214523300009606MarineMIALYPGAFKPPHRGHFNVVKSLLDGSYNGKVYDKDNYKDVGADILSN
Ga0098049_110096333300010149MarineMIALYPGAFKPPHRGHFEVVKSLLNGTHGGQVYTKDNYKDAGT
Ga0098049_127611123300010149MarineMIALYPGAFKPPHKGHFQVVKSLLDGSYNGNVYTK
Ga0136656_116283613300010318Freshwater To Marine Saline GradientMIALYPGAFKPPHRGHFEVVKSLLNGSHGGKVYDIDSYAEAGMGALKGQPDNLQ
Ga0163111_1117224233300012954Surface SeawaterMIALYPGAFKPPHRGHFEVVKSLLNGNHNGVEYSIDNY
Ga0181403_112115613300017710SeawaterMIALYPGAFKPPHRGHFEVVKSLLNGTHGGQVYTKDNYKDAGI
Ga0181412_107185523300017714SeawaterMIALYPGAYKPPHRGHFNVVKSLLDGTYNGSIYDKDNYKETGAELLK
Ga0181390_115871523300017719SeawaterMIALYPGAFKPPHRGHFNVVKSLLDGSYNGSIYDKD
Ga0181416_106391123300017731SeawaterMIALYPGAFKPPHRGHFDVVKDLLSNSHKGKVYDIDNYLDAGAEVL
Ga0181433_100709753300017739SeawaterMIALYPGAFKPPHRGHFNVVKSLLDGSYNGSIYDKDNYKEKGIDLV
Ga0181418_108600223300017740SeawaterMAIALYPGGFKPPHRGHFEVVKKLLSNTHGGKLYNFDD
Ga0181418_109898313300017740SeawaterMIALYPGAFKPPHKGHFNVVKNLLSGNFYGTEYAFDD
Ga0181399_100938563300017742SeawaterMIALYPGAFKPPHRGHFEVVKSLLNGTHGGQVYTKDNYKDAGTSSLSGK
Ga0181402_103370213300017743SeawaterMIALYPGAFKPPHRGHFEVVKSLLNGTHNGQVYTKDN
Ga0181397_119165123300017744SeawaterMIAFYPGAFKPPHRGHFNVVKSLLDGSYNGSVYNKDNYK
Ga0181427_102006433300017745SeawaterMIALYPGAFKPPHRGHFDVVKDLLSNSHKGKVYDIDNYLDAGEE
Ga0181420_102447913300017757SeawaterMATALYPGGFKPPHRGHFEVVKKLLSNTHGGKLYNFDD
Ga0181395_109627623300017779SeawaterMIAFYPGAFKPPHRGHFNVVKSLLDGSYNGSVYNKDNYKDTGA
Ga0181600_10018789103300018036Salt MarshMATALYPGGFKPPHGGHFEVVKRLLNNTHNGKVYNFDDRETA
Ga0181568_1056789023300018428Salt MarshMAIALYPGAFKPPHRGHFEVVKKLLNGTHGGKLYDADSYKDVGKAALAGESYKVEK
Ga0188868_100034833300019077Freshwater LakeMIALYPGAYKPPHRGHFNVVKSLLDNTYNGSIYDKDNYKETGIELLK
Ga0206124_1018071813300020175SeawaterMIALYPGAFKPPHRGHFEVVKRLLNGTHKGKVYDIEDYQDAGLKALSPEESTAEKID
Ga0181605_1031660923300020188Salt MarshMIALYPGAFKPPHRGHFNVVKSLLDGSYNGTIYNKDNY
Ga0181604_1036915823300020191Salt MarshMAIALYPGAFKPPHRGHFEVVKKLLNGTHGGKLYGVDSYKDVGNSFSRLEX
Ga0211708_1014389323300020436MarineMATALYPGGFKPPHRGHFEVVKKLLSGTHNGKVYN
Ga0211576_1066056123300020438MarineMIALYPGAFKPPHRGHFEVVKRLLKGNHGGHVYSIDNY
Ga0211518_1022765513300020440MarineMIALYPGAFKPPHRGHFNVVKSLLDGSYNGSIYDKDNYKDTGASLLKGRNIN
Ga0211547_1037710823300020474MarineMIALYPGAFKPPHRGHFEVVKRLLKGNHGGHVYSIDNYQD
Ga0213862_1014282723300021347SeawaterMIALYPGAYKPPHRGHFNVVKSLLDGSYNGSIYDKDNYKDKGA
Ga0222717_1041877323300021957Estuarine WaterMTVLYPGAFKPPHRGHFNVVKSLLDGSYNGSTYNKD
Ga0222713_1049330223300021962Estuarine WaterMIALYPGAFKPPHRGHFEVVKRLLKGNHGGHIYNKD
Ga0212021_110901023300022068AqueousMIALYPGAFKPPHRGHFEVVKRLLNGTHKGEVYDIEDYQDAGL
Ga0224906_117554123300022074SeawaterMIALYPGAFKPPHRGHFEVVKGLLNGNHGGQVYDIENYID
Ga0196905_115455323300022198AqueousMIALYPGAFKPPHRGHFEVVKSLLNGTHGGKVYDVDSYTEAGASVL
Ga0255765_119059813300022921Salt MarshMATALYPGGFKPPHGGHFEVVKRLLNNNHNGKVYNFDDRETAGS
Ga0255761_1030378913300023170Salt MarshMIALYPGAFKPPHRGHFEVVKRLLNGTHKGEIYDIEDYQDAGLK
Ga0228696_100863723300023568SeawaterMIALYPGAYKPPHRGHFNVVKSLLDNSYNGSVYDKDNYKETG
Ga0232112_102372013300023693SeawaterMIALYPGAFKPPHRGHFEVVRRLLNGNHGGKVYDIDSYADAGVGVLN
Ga0232119_100592533300023702SeawaterMIALYPGAYKPPHRGHFNVVKSLLDNSYNGSVYDKDNYKETGAELLKGRSNK
Ga0232119_101331013300023702SeawaterMIALYPGAYKPPHRGHYNVVKSLLDGSYNGSIYNKDNYKET
Ga0228633_103438923300024228SeawaterMIALYPGAFKPPHRGHFNVVKSLLDGSYNGAIYSKD
Ga0228633_105777623300024228SeawaterMIALYPGAFKPPHRGHFEVVKSLLNGYHGGKVYDINSYAEAGTSVLQGK
Ga0233402_106462323300024229SeawaterMIALYPGAYKPPHRGHYNVVKSLLDGSYNGSIYNKDNYKETGASLL
Ga0228675_109533213300024247SeawaterMIALYPGAYKPPHRGHYNVVKSLLDGSYNGSIYNKDNYKETGASLLGGS
Ga0228661_106904413300024266SeawaterMIALYPGAYKPPHRGHFNVVKSLLDNTYNGSIYDKD
Ga0233400_108665423300024318SeawaterMIALYPGAYKPPHRGHFNVVKSLLDNSYNGSVYDKDNYKETGAELLKGRSN
Ga0228672_109692013300024335SeawaterMIALYPGAFKPPHRGHFEVVKRLLKGNHGGHVYSI
Ga0244775_1022303813300024346EstuarineMIALYPGAFKPPHRGHFEVVKRLLKGNHGGHVYSIDNYQDVGTKALSGKKGKL
Ga0244775_1083857523300024346EstuarineMIALYPGGFKPPHRGHYEVVEKLLNGSHKGREYSIEDYQKQGTKALTKADST
Ga0244775_1120636913300024346EstuarineMIALYPGAFKPPHRGHFEVVKGLLKGNHGGHIYTKDSASDAGTKAL
Ga0209336_1014321813300025137MarineMIALYPGAYKPPHRGHFNVVKSLLDNSYNGSVYDKDNYKETGAE
Ga0209634_131704713300025138MarineMIALYPGAFKPPHRGHFEVIRGLLNGNHGGKVYDIDSYADAGIGVLNGKGDE
Ga0208428_100262713300025653AqueousMATALYPGGFKPPHRGHFEVVEKLLSNTHNGKIYSFDDRED
Ga0208162_119664223300025674AqueousMIALYPGAFKPPHKGHFEVVKRLLNGSHGGNIYDKETGDDAGTKALAGKSGKVE
Ga0209657_111823413300025676MarineMATALYPGAYKPPHRGHFEVVKRLLNGSHKGKVYDISNFKDIGVDALSE
Ga0209771_108159313300025701MarineMATALYPGAFKPPHRGHFNVVKNLLNGNHKGKLYTYDDAT
Ga0209362_109147223300025770MarineMIALYPGAYKPPHRGHFNVVKSLLDGSYSGAIYSK
Ga0209951_112638623300026138Pond WaterMIALYPGAFKPPHRGHFEVVKSLLNGTHGGQVYTKDNY
Ga0247599_109715533300026470SeawaterMIALYPGAYKPPHRGHFNVVKSLLDNSYNGSIYDKNNYKET
Ga0247571_103524523300026495SeawaterMIALYPGAYKPPHRGHFNVVKSLLDGSYNGSIYDKDNYKETGANLLKGTSNS
Ga0208922_104011013300027197EstuarineMRSVLYSGAFKPPHRGHFEVVKRLLNNTHGGQPYDIDSHKEAGASAL
Ga0208133_116199213300027631EstuarineMIALYPGAFKPPHRGHFEVVKSLLNGSHGGQVYSK
Ga0208304_1015719913300027751EstuarineMAVALYPGAFKPPHRGHFEVVKRLLKGTHDGKPYTLD
Ga0208305_1019626723300027753EstuarineMAVALYPGAFKPPHRGHFEVVQGLLKGNHGGHIYT
Ga0208671_1029605723300027757EstuarineMIALYPGAFKPPHRGHFEVVKRLLKGNHGGHVYSIDNYQDVGTKALSGKK
Ga0209711_1046531623300027788MarineMIALYPGAFKPPHRGHFNVIKSLLDGSYNGSIYNKDN
Ga0209354_1040486113300027808Freshwater LakeMRAVLYPGAFKPPHRGHFEVVKRLLNNTHGGHPYNI
Ga0209404_1098346133300027906MarineMIELYPGAFKPPHRGHFNVVKSLLDGTYNGAVYDKDTYKDIGPKVLK
Ga0228674_111297223300028008SeawaterMIALYPGAFKPPHRGHFNVVKSLLDGSYKGTVYNK
Ga0247582_100749943300028109SeawaterMIALYPGAYKPPHRGHFNVVKSLLDNSYNGSVYDKDNY
Ga0228621_106693913300028124SeawaterMIALYPGAFKPPHRGHFEVVKRLLKGNHGGHVYSIDNYQDVGTKALSGK
Ga0257114_125515913300028196MarineMIALYPGAYKPPHRGHFNVVKSLLDGSYSGAIYSKDDYKEKGADL
Ga0228613_101297943300028279SeawaterMIALYPGAFKPPHRGHFEIVQRLLDGTIKGKLYGLDNY
Ga0233394_109506023300028391SeawaterMIALYPGAYKPPHRGHFNVVKSLLDGSYNGSVYNKDNYKETGAELL
Ga0307488_1065684913300031519Sackhole BrineMAIVLYPGAFKPPHRGHFELIKSLIKGNHGGVVYDIDTAQDALG
Ga0315322_1033267323300031766SeawaterMATALYPGGFKPPHRGHFEVVKKLLSNTHGGKLYNFDDREEAGL
Ga0315322_1071524713300031766SeawaterMIALYPGAYKPPHRGHFNVVKSLLDGSYSGAIYSKDDYKEKGAD
Ga0315330_1036319413300032047SeawaterMIALYPGAFKPPHRGHFELVQSLLNGSANASVYDIDDYL
Ga0315321_1079638313300032088SeawaterMIALYPGAFKPPHRGHFEVVKRLLKGNHGGHVYSIDNYQDVGTKALS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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