Scaffold Ga0211521_10059334

Overview

Basic Information

• Taxon OID: 3300020428
• Scaffold ID: Ga0211521_10059334
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1944
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3757
  • Long. (^o): 19.4167
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053549	Metagenome	141	Y
F059942	Metagenome	133	Y
F079212	Metagenome	116	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211521_100593341	F059942	AGG	MKRLNTIAAVVMKIGDLISFKPIDFGLEDWSNPCIVMSAYESPNEGLWSVWCDGVFCVIDDTNYEIMYLTGS
Ga0211521_100593343	F101902	GAGG	MRVGNLVKRRDDHVHHGIVVEVGPQETATDHGSTVAKVQWNDGDLTCEFIKMLEVLSEAV
Ga0211521_100593345	F053549	N/A	MKIGDLVKWENVMNDSMDRYREDHGIVVKMSRTGHDTESAQVLFTDGELWWLDTQNLEIVNESR
Ga0211521_100593346	F079212	GGAG	MNKHERQLIDRCIESHYNMIRMHRRAIIELSRKTIKERDWCDECFDFKIINENR