Scaffold Ga0211580_10033633

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10033633
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2217
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002374	Metagenome / Metatranscriptome	566	Y
F039389	Metagenome	164	Y
F066838	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_100336332	F002374	N/A	MGVKLYKSYFMMYGNNMDQVLLYVSIILASVTFFLCLYALARVGKLLNSVKGLDWDTIASLTGDIGTIKKSIQTLNNRINGLNSPRLNDELLQYAIKQQGNVTDINKQKLGG
Ga0211580_100336333	F039389	AGGAGG	LAFLGDLGKVFGLGSSKQVLGGFGETVGNVFGIGGTGRRIGETIAGATDSLASGTADQPLEQSAVPTPGQNGRAQETSRSGSQTTNIIDVSRAMDTQQAGLGVLTPFLPQIAKIFGNRAVQTGLGAGAGILAGTMSGDSRERPVLTQSRRNKARVRQLVNFLGIEGTASFLSQQGGVTVTANDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEAVSMGKTTRRASPMRRASSTTLIKN
Ga0211580_100336334	F001611	AGGAGG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGSYLNNDLITTGSQRNRVLVRFTNDTSGTRTIRAGIFIG
Ga0211580_100336335	F066838	GGAGG	MGQEFFINSQSLQSKVDQLLPSQGGLGSGFDLSASTQIVPIVDLTESAEGSSVRPDLQTALSHATVTAFSVSNTTTTIINNT