Scaffold Ga0211580_10000047

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10000047
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 86865
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (61.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003028	Metagenome / Metatranscriptome	512	Y
F003043	Metagenome	511	Y
F039826	Metagenome / Metatranscriptome	163	Y
F089045	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_1000004714	F039826	AGGAGG	LSRVRIDIDDELDFDLEEGDIIIHIKHDGNIGKVCMPDMNSTVQNSDGYKKMLQCLEILKPGTKKQFIKYHEKKRKGTMH
Ga0211580_1000004766	F003028	AGTAG	MPVKFDLDQAKHLGPLIGSSNSNKTVVFDYATVNSELNLQDMLNSTHFKDCEILTTEELYKKYLFFDGVCNMPMFPGIKSFDIDQENCSPQTLSLLLAVYLKKPVIFLLGYDISNPTELTRLKSIALSNPDTKFMYICNPPRTYQLDDLSNGFCDTYIKFQELIDREK
Ga0211580_1000004775	F089045	AGGAG	MKNFFKSKKVWIGIAIVVIAIGWAVWSGQPAPEVQG
Ga0211580_1000004792	F003043	GAG	MILVTGGHGNLANSLKEFIDGDYYGKDMLDITDRNCIRNLPEYEILIHTATGNRNINENLSLLFSKAKKIFVFTSKQGTFLNWKKTGPINYGLEKLNLNFIVYRHNMENQNAQIFEPGHMETKEDYDKIAKKFADIYEDWQFTKNQIYDLVKESYIPY