Scaffold Ga0211651_10021606

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211651_10021606

Scaffold Ga0211651_10021606

Overview

Basic Information
Taxon OID	3300020408 Open in IMG/M
Scaffold ID	Ga0211651_10021606 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3097
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_109
Coordinates	Lat. (^o)	2.0596	Long. (^o)	-84.553	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037684	Metagenome	167	Y
F105913	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211651_100216064	F037684	N/A	MAINPNKKYKFVDKDLVNGFVVLTGKELNAILEKSYKEQMEKKK
Ga0211651_100216067	F105913	GGA	MKNKYNKEAIDRAIKQDKTISKKQAKSIHALLKGNY

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