Scaffold Ga0211651_10010129

Overview

Basic Information

• Taxon OID: 3300020408
• Scaffold ID: Ga0211651_10010129
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4961
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0596
  • Long. (^o): -84.553
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044224	Metagenome / Metatranscriptome	155	Y
F046070	Metagenome / Metatranscriptome	152	N
F048244	Metagenome / Metatranscriptome	148	Y
F090610	Metagenome / Metatranscriptome	108	N
F101084	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211651_1001012910	F101084	N/A	MYKNVKKYGSSSNDLVYEFNDDMWYLYHNGSIDNNEDFYNEKHQWIENKVIYTHECKEICNELDYDIFEEHYVFGRANDWSQAAFAALYDLLNDHNDALTFDEMKLQNENA
Ga0211651_1001012914	F048244	N/A	MKVELTQKEIDRLYFDLKDYVKTLYYVDKLKDLTEDQKNECKIELELIEKFSKL
Ga0211651_1001012917	F044224	N/A	MKLNKIIESYKNSNMNKELLSYKLKRYYNLSENERIIIKQSI
Ga0211651_100101298	F046070	N/A	MNLKRIKELRKATHELQTKMDLISGRVMQGGLSLDQQILHLENFAASQTLHLLKSEELYKLLKNK
Ga0211651_100101299	F090610	N/A	MKMHKVWRLYLLDNKSITEISKELNITKSKLKLKYGLK