Scaffold Ga0211575

Basic Information
Taxon OID	3300020407 Open in IMG/M
Scaffold ID	Ga0211575_10000076 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020407 Open in IMG/M

Scaffold ID

Ga0211575_10000076 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	48760
Total Scaffold Genes	70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	56 (80.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

48760

Total Scaffold Genes

70 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

56 (80.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.3379	Long. (^o)	-127.7376	Alt. (m)	Depth (m)	650
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.3379

Long. (^o)

-127.7376

Alt. (m)

Depth (m)

650

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024350	Metagenome / Metatranscriptome	206	Y
F049949	Metagenome / Metatranscriptome	146	N
F072758	Metagenome	121	Y
F092747	Metagenome / Metatranscriptome	107	N
F094411	Metagenome / Metatranscriptome	106	N
F099879	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211575_1000007623	F092747	AGGA	MSEIKKDISVNMPGTGNYFKLMGYYNINDIKYDLLKIIQPYDGYMYNEKETNKLISVFKSYLGDLKRSYKVYSFEIAPTEKENAITFDIQIKMQKDRSPKKLKIHVGKLWLPKKEEEEEKDA
Ga0211575_1000007644	F072758	GAG	MQTYLQEKIKMDNNLEQLYRDFERLSMQHEPLASAGVMMAQALKIYKAMLSEEEFLMVTEHILESRDEITIERPTLN
Ga0211575_1000007650	F094411	GAG	MVKQSQELQNSQAKLISLINRDYLTVKEIFKNTHTLRLTKYGKNLLSKQYDAYQFESPTLSARNLINLLRKMNYPYYVDKKIIVLFTEKDAFVAKLAGAQGWLDGK
Ga0211575_1000007651	F099879	AGGA	MANRKFNIEDDEKIVVHCTDNGQDVEVEYISQHNGMIRTSLQGIPLNFKHHRDNIYVANAHGREFVMKL
Ga0211575_1000007660	F049949	N/A	MGMVKVKKEKNKIKLVNNGGSLSETDLQLIAGTELVMQMMRNRIVVVTNNNDIAWNDLMTDVNGLYHIRPLDKSKQIYQLWFELKGDVEQFNKNLYVSKLSDTAHESV
Ga0211575_1000007670	F024350	N/A	IDVFHKKHKQSQEGWNEIFDMLFPRYNTNERMLSHRYNTLVENKLHLDELDEQHTGNEQQIRMFVQLDKKHPRVLSFGPDLEKMYYDYKDEFNLGELDKENIHTFISEMRNRCVWNEQKWDQFHHPLHYITFDPGDIWFFNAQWITHQIVYGTKLQCFEADILNESLLSPELCIAERIKD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211575_10000076

Overview

Ecosystem & Geography

Associated Families

Sequences