Scaffold Ga0211659_10070114

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211659_10070114

Scaffold Ga0211659_10070114

Overview

Basic Information
Taxon OID	3300020404 Open in IMG/M
Scaffold ID	Ga0211659_10070114 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1640
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_102
Coordinates	Lat. (^o)	-5.254	Long. (^o)	-85.2248	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F097142	Metagenome	104	Y
F105913	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_100701142	F105913	GAGG	MNKYNKKAVENLIKQDKSISKKEAKLIHALLKGRN
Ga0211659_100701144	F097142	N/A	MNESNLRLSNVQQKAIRALAKADARPVKQMLSMVLNEGFNWVFNDFQENMQPYQGWPDDWEKIKKELEQEYKKAMEVK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.