Scaffold Ga0211532_10044012

Overview

Basic Information

• Taxon OID: 3300020403
• Scaffold ID: Ga0211532_10044012
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2155
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.5679
  • Long. (^o): 66.4581
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F053549	Metagenome	141	Y
F059942	Metagenome	133	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211532_100440122	F053549	GGA	MKVGDLVKWENVLNDSMDHYRTDYGVIIKMSRTGHTTHSAQVLFSDGELAWFDTQSLEVVNESR
Ga0211532_100440123	F059942	AGGA	MKVGDLISFKPIDFGLGDWSNPSIVMHEYESPNEGLWTIWCDGVFCVIDDENYEIIHLTG
Ga0211532_100440125	F079212	AGGA	MVTQDEKELIDKCIESHYNMIKHHRKAILELERKKIKERDWCDECFNFEIVNEKKR
Ga0211532_100440126	F018286	GGAG	MNMLTTFILVGMVDSFDPYFATVELNTTPASNGGPSIAIMPVSAFPCEIHEGKVFYVVKLHEDDDATIVCQKDVNGDSGRERTD
Ga0211532_100440129	F030886	AGGA	MSYHGQPPPDYNQVGIAVVNPLHRIEQKLKKIKDVLDNISDQSILTANDLKIKIQKIMEE