Scaffold Ga0211532_10000027

Overview

Basic Information

• Taxon OID: 3300020403
• Scaffold ID: Ga0211532_10000027
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79212
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (34.40%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.5679
  • Long. (^o): 66.4581
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002876	Metagenome / Metatranscriptome	524	Y
F019256	Metagenome / Metatranscriptome	231	Y
F040584	Metagenome	161	Y
F089561	Metagenome / Metatranscriptome	109	Y
F098264	Metagenome / Metatranscriptome	104	Y
F106117	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211532_10000027108	F040584	GGA	MSKNIKGGGYVIGAPKKTNQGQGKHSRPNHGRKKLRGQGK
Ga0211532_1000002715	F019256	N/A	MANDPGDSGSNTQDAAVDLETFQQLLDKLEGSKKRQQRQKSVEGRRDIYSQGLASMMSNF
Ga0211532_1000002752	F089561	AGGA	MCPAILFVSYLITTYLKGIPHAITPNVDAKVFELIPITKDSQISKAFCSPTKTGAMNILNWINKNDSNLASKELSVQPEAKFFK
Ga0211532_1000002756	F106117	N/A	MALSFESSPEEEFWSVRMNRHIEDCSSVSELKQIATLLVKLAATRQCVIKGLVKESLDRMESEFIIGS
Ga0211532_1000002761	F098264	AGGAG	MNSKNYEEHIYYILDHFTKGGTPLPALIGNKLEWQVTTLVAGLLANEHVSSSLDAEDLVDAAINYVNIIQSRLGYYQDSKVNNLEHLLDK
Ga0211532_1000002787	F002876	AGG	MACKQSELVSAINSFGAARSTGDANLVAFSGRLIGELLETLTFEPESDPTEEGETSDDQS