Scaffold Ga0211637_10001853

Overview

Basic Information

• Taxon OID: 3300020398
• Scaffold ID: Ga0211637_10001853
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000949 (ERX555993-ERR599072)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10949
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_112
• Coordinates
  • Lat. (^o): -23.1719
  • Long. (^o): -129.6713
  • Depth (m): 696

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056674	Metagenome / Metatranscriptome	137	Y
F063766	Metagenome	129	Y
F105355	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211637_100018532	F105355	AGAAGG	MGALNSCDSSDKLTLLLNIRQGTQSTTYSVSNLPDWYDMLVIFAIYGVVAMLIFYVGLWIGSRYIT
Ga0211637_100018533	F063766	AGGAGG	MALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGSSDGGT
Ga0211637_100018535	F056674	AGGAG	MHKKEIIDKIRKGIPRFKQHGQYQMSLGALIKALQKERVGLLVKITDKHYPGRSHSYFGYHTDLAFEPTEDPITVAEFLKECEDSVGKSFITADHFDEFYKDYVMQIGAPLWISTLGQASQKGIVDLVPTDGYIKIITKTIEEVEVVDG