Scaffold Ga0211583_10034604

Overview

Basic Information

• Taxon OID: 3300020397
• Scaffold ID: Ga0211583_10034604
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2041
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 6.0124
  • Long. (^o): 73.8985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000896	Metagenome / Metatranscriptome	845	Y
F037233	Metagenome / Metatranscriptome	168	Y
F060981	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211583_100346042	F060981	AGGAG	MIITMTQDTKDRIADLERQKIELNNRIETLSYSGNHQRMLELEQEVWEIEDTIKKLIP
Ga0211583_100346044	F037233	AGGAG	MDELDNILTNIDLEEEKQDATGDYADEWWCMDCEHGPMNEKDDKCDRCGAKNSQYHGNEEITGWEDEDIESEVEEIW
Ga0211583_100346045	F000896	AGGAG	MTNKINLVINLSILGLLIYLAVSVKQLQDKVFPDPNIMIPLMSYDNSKQELEYNIREFLNSVLEQAIEEQENQ