Scaffold Ga0211583_10024945

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211583_10024945

Scaffold Ga0211583_10024945

Overview

Basic Information
Taxon OID	3300020397 Open in IMG/M
Scaffold ID	Ga0211583_10024945 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2493
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_042
Coordinates	Lat. (^o)	6.0124	Long. (^o)	73.8985	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014670	Metagenome	261	Y
F051973	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211583_100249452	F014670	AGGAG	MGDEKLYNDVHNYTKFKLVEMLINRLNDGRTKVDDMNSIEELADDVLKTLAICGMQYYQELREEFKXK
Ga0211583_100249453	F051973	AGGAG	MKIGIDCDGVLRDLITCITDTVKETHPQHADKILE

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