Scaffold Ga0211497_10000124

Overview

Basic Information

• Taxon OID: 3300020394
• Scaffold ID: Ga0211497_10000124
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40610
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_058
• Coordinates
  • Lat. (^o): -17.5656
  • Long. (^o): 42.1988
  • Depth (m): 66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064787	Metagenome	128	Y
F084340	Metagenome / Metatranscriptome	112	Y
F095604	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211497_1000012433	F095604	N/A	MSDQGTEAARALRKLQELTAKYANLEMDADQLNQSISERINATEELKEIIAKATQAKKDRERR
Ga0211497_1000012434	F084340	GGAG	LTNINVTETEHPAAMHKQDINACVHHIRDAVVEYVESEILTPGEFVNCIRTALSDSLNHHTNKAELLKNAQELLTNNITNKEFVDYKL
Ga0211497_1000012441	F064787	AGGA	MSDRLDRLINSSAQDLMGKGSTMYMSLKTAILDHDQKELLKKALFFYQKDACEHHGTVSDTDKGIIESIIDKLHMKHI