Scaffold Ga0211680_10027998

Overview

Basic Information

• Taxon OID: 3300020389
• Scaffold ID: Ga0211680_10027998
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2799
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -61.9898
  • Long. (^o): -49.3613
  • Depth (m): 790

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090256	Metagenome	108	N
F093972	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211680_100279981	F093972	N/A	MEMKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRESMNFPVTYFRGADWDMV
Ga0211680_100279984	F090256	AGGAGG	VQSNTSTVTIDTGELGEQLVEEHFKHAERSDDWFDSEKDGTIKEKTYEVKTFRLNNRDQGFWVESSQFNKLDNVDILYFVKIPETKEEGATIYECMNHKSLNVYENFVLGQFKQMRCYFLDNCKFIANINDERTDTIYENSIAMSKHNRFT