NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211677_10003643

Scaffold Ga0211677_10003643


Overview

Basic Information
Taxon OID3300020385 Open in IMG/M
Scaffold IDGa0211677_10003643 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10115
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_093
CoordinatesLat. (o)-33.832Long. (o)-73.0366Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019142Metagenome / Metatranscriptome231N
F052602Metagenome142N
F105082Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0211677_1000364312F052602N/AMPKGIRPSKKNNSKSVGIRKMDNYDSVGFRNSAIKRINSTPGDVEIYNPSTGKSKMVYAPKGSREEKILHATMKTKNPMDKK
Ga0211677_100036432F105082N/AMSLIIAIGNFIGTNQGSVNPPYGGEDVVTEIGIQMVSELGSQDIITEQAP
Ga0211677_100036435F019142N/AMKKLGAWLIKTSHDIARWWGNLTHNFKCGWNKIIFAISFKMKDCKNEKCICTK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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