Scaffold Ga0211646_10074008

Overview

Basic Information

• Taxon OID: 3300020383
• Scaffold ID: Ga0211646_10074008
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1266
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.1008
  • Long. (^o): -84.5107
  • Depth (m): 380

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052655	Metagenome / Metatranscriptome	142	Y
F056674	Metagenome / Metatranscriptome	137	Y
F063766	Metagenome	129	Y
F105355	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211646_100740081	F056674	GGAG	MDNQRKTTETVKMLRKIIPITRIKERAHLQMTIGSLIKALQRERVGLLVKITDKHYPGRSHSYFGYHTDLAFEPTEDPITVAEFLKECEDSVGKSFITADHFDEFYKDYVMQIGAPLWISTLGQASQKGIVDLVPTDDYIKLVTQNIEVEEEDGSE
Ga0211646_100740082	F063766	AGGAGG	MALNKQKKLQYIEQILEEVKNGSIDDKEDSILIDVALDFVEDLKEGKSDGDT
Ga0211646_100740083	F105355	GAGG	METPNSCDNSDKLTLILNIRQGTQSTTYSVSNLPDWYDILAIFAIYGVVAMTIFYSGLWIASKYKGEQK
Ga0211646_100740084	F052655	AGGAG	MTVLILVTGLVLGMFTYQPSWFDTRPHYYHLTYNSKSECQEAREMVKDKGTVCTDKHEMYKTK