Scaffold Ga0211686_10011623

Overview

Basic Information

• Taxon OID: 3300020382
• Scaffold ID: Ga0211686_10011623
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3821
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_084
• Coordinates
  • Lat. (^o): -60.3606
  • Long. (^o): -60.5096
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033962	Metagenome / Metatranscriptome	176	N
F066136	Metagenome / Metatranscriptome	127	N
F090610	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211686_100116231	F066136	N/A	MNKIKTLILLTLLSSCYVEDILEQGDTFVIPENSCDCVYGDEYTGEWFTMKLRPGLKSFGWLSYNRKDYCEIVMKGYLINCK
Ga0211686_1001162311	F033962	N/A	MNMTELKQYMIDNKRIKVAQWNKDRQGNHCQGFTQKEFEQSMEVDRIKSRTRRTHSKGNHWNFNDTKNRELFTK
Ga0211686_100116239	F090610	AGG	MNEPWRLYLLDNKSLTEISKMLNITKNKLINEYGLK