Scaffold Ga0211686_10001704

Overview

Basic Information

• Taxon OID: 3300020382
• Scaffold ID: Ga0211686_10001704
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12516
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_084
• Coordinates
  • Lat. (^o): -60.3606
  • Long. (^o): -60.5096
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002629	Metagenome / Metatranscriptome	542	Y
F006815	Metagenome / Metatranscriptome	364	Y
F011006	Metagenome / Metatranscriptome	296	Y
F015148	Metagenome / Metatranscriptome	257	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211686_100017041	F015148	N/A	MDWYSPEEYKEYECTECGTEIDKAGVCSRACHDASMI
Ga0211686_1000170414	F002629	N/A	MKVNEAAWEKLKKQIEYYTEADTSISDISINYQIKETKNRNYLRLNIIIDKWDKITG
Ga0211686_1000170426	F006815	N/A	MDTNYSKETAESKFDEYTYRIEALCNRIEELKAKIEVSQILKQNG
Ga0211686_100017043	F011006	N/A	MKKLIHKYLVNKSIKPYKVIALSTGVIVEHYRNGKLKTEYYE