Scaffold Ga0211476_10005383

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211476_10005383

Scaffold Ga0211476_10005383

Overview

Basic Information
Taxon OID	3300020381 Open in IMG/M
Scaffold ID	Ga0211476_10005383 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291769-ERR318620)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7101
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (68.75%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_030
Coordinates	Lat. (^o)	33.93	Long. (^o)	32.7322	Alt. (m)		Depth (m)	70
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087330	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211476_100053837	F087330	GGAG	MSKVSGKLCINFEVDTDKFKRDYINFLYNIASRVLKDWNGYYEGIHLSLGEDDYVEVDQ

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