NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211652_10063232

Scaffold Ga0211652_10063232


Overview

Basic Information
Taxon OID3300020379 Open in IMG/M
Scaffold IDGa0211652_10063232 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1111
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084340Metagenome / Metatranscriptome112Y
F095604Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0211652_100632321F084340N/ATNSNIKITESEHPAALHQQDINACVHHIRDAVVDYLESDVLTPGEFVSAIKTALGDSLNHHQTRANLLKDAESLLTNNINPTAFNTFRLDELQE
Ga0211652_100632322F095604GAGMKEADEAAKALARLQELTDKYSNTEMDADQLRQSISERIQASEDLKDVMRRALEAKRRNETGSV

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