Scaffold Ga0211652_10011661

Overview

Basic Information

• Taxon OID: 3300020379
• Scaffold ID: Ga0211652_10011661
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2648
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2476
  • Long. (^o): -85.3343
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017499	Metagenome / Metatranscriptome	240	Y
F035780	Metagenome / Metatranscriptome	171	Y
F087903	Metagenome / Metatranscriptome	110	Y
F096215	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211652_100116611	F087903	N/A	MGQIQTEEEIIEEILTEANAYNLRQEVKTTAEMFIKDDPDLNHVAAYNMAYIEWIK
Ga0211652_100116614	F017499	AGTAGG	MHGVTEDNVYVDLNWGFDHVLGYWYDIIETRNGEEKVIEEWSSGMGGSRSKMLEFLIKYNLPEEHRSMVGLDMQF
Ga0211652_100116618	F096215	N/A	MANFESGEKVTWVEEMVCVPHPDGKTDRNGNVLPVFRDKTVTGTIINSLYDNKYTVRPDGTNTPKGMDSYYDKTVNGSKISKI
Ga0211652_100116619	F035780	N/A	MATPEEYELTVKESKEVWWATTKQYDLEIDGENISVRIAETPKSTEFFEYEENSGWNEADTDSGLMAIVYESWQNGELE