Scaffold Ga0211527_10008523

Overview

Basic Information

• Taxon OID: 3300020378
• Scaffold ID: Ga0211527_10008523
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4004
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0342
  • Long. (^o): 64.5162
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071134	Metagenome	122	Y
F089162	Metagenome	109	N
F096079	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211527_1000852310	F096079	N/A	MYESVKFIKLTRAGGYGEIVVNLHHIVKMKARYKNGKGAIIWLAKNGSESGYDMYEVVEDLDLIMQYLSVKNNS
Ga0211527_100085236	F071134	N/A	MNNLVIKSTRTFMEDSCIRVKGTVEIDNVKRKFAVETDEGGLVNVEGVDTQLLPQLVEEILEVDPDLDCFLG
Ga0211527_100085237	F089162	N/A	METTNQIEKALEKKVNAEIEEIVDEFIDSCTALGKKYGCHVFQDLKYKDSSITTLKEYEVKTILFNSLQKKYGPSMLKKKSEELIAKLDLI