Scaffold Ga0211682_10012991

Overview

Basic Information

• Taxon OID: 3300020376
• Scaffold ID: Ga0211682_10012991
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3422
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -62.2658
  • Long. (^o): -49.1658
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049233	Metagenome / Metatranscriptome	147	N
F059362	Metagenome / Metatranscriptome	134	Y
F087020	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211682_100129913	F087020	N/A	MSYTEWVERYKGKQIDEVILEDHKVYLKQFNAWQIGNIEKV
Ga0211682_100129918	F049233	AGG	MRVDEGDYKRKVLGDIGEKIVGNYMSRIGRTVEMSTDPFDSEKDMKVNGVSLEVKTQVPYCLEKSFTIRRNQLNKCLNVDYFVVVQAPCEYLNESAIWKVKKGFTYNTVKLRGGGERISIPMYQDNVIKKMDIIGEDKNLLRKYSTDFGLY
Ga0211682_100129919	F059362	GGA	MIKTGEAFLVDDDTKLRRTADIEGNIGKIIRVGTMNDTDFDYDIGSLIAINDVSLVIRSLQDGEIKAYDLNCTNSGLYKGTITV