NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1003247

Scaffold Ga0211504_1003247


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1003247 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6275
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025289Metagenome / Metatranscriptome202Y
F041784Metagenome / Metatranscriptome159Y
F044516Metagenome / Metatranscriptome154Y
F067740Metagenome125Y
F095522Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10032473F095522GAGMEISIKPGTPPEKVFTERSGSKYDEAIKTAIANKGEWFQVASCPVEKRDSMYSTASAIRNGRLATIPQDENINIVCRRVNDSIVMFITAL
Ga0211504_10032474F025289N/AMWYISKRIEKGKQMDICEEREVSRWSMKQEIIDDLENYDEVTDDNIREICDSLVPVYNSELIDLASHYSGEEYWELWLNNELGGETPLDILRGNVYSLYYQIGCEVLEERENKE
Ga0211504_10032476F067740GAGGMKVKDMIEMLELADKDSEVMLEVRDKDINLVGYFEIVSDWSEYGGYDPDEIYYFESAKEPLSKAHVELTLKNDEWVTLGIDND
Ga0211504_10032477F044516AGAAGMCRDTGYYEPRDDVTTKVVEEMFEKQNKMLMGYYLKMAYQDDQHTYMNDLYWVLQNKFEDVDLKAVESHVEELLLIDDSDRYLFEEDE
Ga0211504_10032478F041784AGGAGMYTKTIGYCGVDSGQLFITDPCYIKHQEQGNGQWNMEWLDTDDGRSYKTLPDPTLDGETKNFYSKVCEANGREQAGVEVELGVAFGTTHGDGNYAVQGIFDDDDVMVGIFMDLDGRVKGEFNYETEDMWS
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