Scaffold Ga0211594_1006979

Overview

Basic Information

• Taxon OID: 3300020340
• Scaffold ID: Ga0211594_1006979
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555960-ERR599119)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2628
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.895
  • Long. (^o): -142.6228
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053549	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211594_10069795	F053549	GAG	VKVGDLVSWESVLNDSMDYHTKSYGLVLQISKTGHKTKSAQVLFAGGETVWFDTQVLEVVSASR