Scaffold Ga0211502_1000405

Overview

Basic Information

• Taxon OID: 3300020332
• Scaffold ID: Ga0211502_1000405
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX555956-ERR598975)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12940
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.49
  • Long. (^o): 39.8483
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026709	Metagenome	197	N
F032813	Metagenome	179	N
F058216	Metagenome	135	Y
F079222	Metagenome	116	Y
F096041	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211502_100040510	F032813	AGGAG	MKTNEQGEVWLDKVQAYVCPSYLNETCTDFREKSSELVYNIYQKYYGHKEGKNKSEISDELFNLIDSGKYKKRNLIKALRLKFPDVNSGVICRLIKKYLSLRILEIDRTYKTKPFVIKGKYYVGGQ
Ga0211502_100040511	F058216	AGGAGG	MNKTIGQLVKDKHWSVQGLAKAINITKEDIRKWEKSNKPYKKLKKKSYLW
Ga0211502_100040513	F079222	AGGAGG	MNNNTVHNEEGRLVACDEATILELLEENGYLINISEKEAKQLRIEHGVDDE
Ga0211502_100040514	F096041	GGAG	MNKNKEYIYITRTMKINVPALLCQDAIDKIQSMKKNNLIPKEKGFLYTRCRVRDSGRDKYGL
Ga0211502_10004058	F026709	AGGA	MYCILIKDNGRYRIYTNEIFNLLEEAIDYAKRCKIKVKWKVVEFDYKYFGGK