Scaffold Ga0211667_1000016

Overview

Basic Information

• Taxon OID: 3300020282
• Scaffold ID: Ga0211667_1000016
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64289
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (14.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9488
  • Long. (^o): -96.0293
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044224	Metagenome / Metatranscriptome	155	Y
F046070	Metagenome / Metatranscriptome	152	N
F048244	Metagenome / Metatranscriptome	148	Y
F048320	Metagenome	148	N
F090610	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211667_100001625	F048320	N/A	MKQLLATVLLILSYSCASIKGQAYIDINENIDYERNEDLRYRTRFKVGYKIYLGDKHTIK
Ga0211667_100001637	F044224	N/A	MKLNKIIESYKNTNMNKELLSYKLKRYYNLSENERLIIKHSI
Ga0211667_100001640	F048244	N/A	MKSLKDILYQIKMKMNLEDKNMKVELTEREIDRLYFDLKDYVKTLYYVDKLSELSESDKEECKIELNLIEKFSKL
Ga0211667_100001644	F090610	AGAAG	MHKVWRLYLIDNKSITEISKELNITKSKLKLKYGLK
Ga0211667_100001645	F046070	N/A	MNLKRIKELRNVVHDAQTKMDLISKRIMQGGLSLDQQILHLDNFAANQSRHMLGNEELYKLLKNE