Scaffold Ga0211568_1018194

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211568_1018194

Scaffold Ga0211568_1018194

Overview

Basic Information
Taxon OID	3300020277 Open in IMG/M
Scaffold ID	Ga0211568_1018194 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX556102-ERR599152)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1714
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_137
Coordinates	Lat. (^o)	14.1468	Long. (^o)	-116.6821	Alt. (m)		Depth (m)	375
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028834	Metagenome	190	Y
F087030	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211568_10181943	F087030	GGA	MKIMLIVYICASIGGTCDTWVKETHFDDWDSCMRAGYTTSLDLIKEAGPEYVNKSRMYVKFICKTAPVEEKKT
Ga0211568_10181946	F028834	N/A	KIDIRAKNVAYITIGKWVIYVDDSTGEQIIDSWKE

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