Scaffold Ga0211629_1104238

Overview

Basic Information

• Taxon OID: 3300020273
• Scaffold ID: Ga0211629_1104238
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000678 (ERX556047-ERR598999)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 571
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.978
  • Long. (^o): -139.2432
  • Depth (m): 600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F022974	Metagenome / Metatranscriptome	212	Y
F065850	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211629_11042381	F065850	GAGG	LKIVSTKQFWWRFNHLKRNGGEITVTDRTRPFDLKEWNRIESL
Ga0211629_11042382	F022974	GAG	MENNETYYIAKLSKEGEFLSSDIFETLTAARLWAMKETKLLVSDSFLKKCKADDVVVEIDKHFFGYEISSEELLKNSVRVS
Ga0211629_11042383	F000615	N/A	NIVSGLERPENIMCRIRLFYECSDGTMGFAEHVMRYEDDIVGFIKHWKTGGRMVITEHIDLV