Scaffold Ga0211534_1023251

Overview

Basic Information

• Taxon OID: 3300020261
• Scaffold ID: Ga0211534_1023251
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000401 (ERX556096-ERR598970)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1079
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_064
• Coordinates
  • Lat. (^o): -29.5023
  • Long. (^o): 37.9965
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058430	Metagenome	135	Y
F092221	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211534_10232511	F092221	GGCGG	MAFEIRDFGKSSNFDFNKKFKNFDNKPKDPSIYPRGSDGYELESEVKFYNQDSLWTRWRRGYELYVMMQTILGSTSKERDKRGDYRLFFTFQQFPGVFIPARIFTFPSKNKELGEHVCGMRDTDGFSFYDFGLPILDVRYLAPQVNATYSQSGTTLVVTKNDHGLFPGDDVYLDISTGSATDETLTIVS
Ga0211534_10232512	F058430	N/A	VTIANGHNLEIGQNVFLDFSTYSSGTVPKDDTFEVKDTTNFTSTTFDVDIPSLSGPITGNVNASLPTDFCFYLVSTGTVTNVNQFFPLFVASIDSSQQYYSLTLNEILPLINHPTVQAGSNFGSGNNEIAPKQRGLMLKRGQALYVAASGATALTNGFYCNVQGGFY