Scaffold Ga0211529_1000818

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211529_1000818

Scaffold Ga0211529_1000818

Overview

Basic Information
Taxon OID	3300020258 Open in IMG/M
Scaffold ID	Ga0211529_1000818 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5324
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_038
Coordinates	Lat. (^o)	19.0108	Long. (^o)	64.532	Alt. (m)		Depth (m)	25
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016832	Metagenome / Metatranscriptome	244	Y
F070124	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211529_10008183	F016832	N/A	MSREISYTTRTFYVPAEKIETLVKFQGKCKENGHKSYSEVLLKLMEQYNEQ
Ga0211529_10008187	F070124	N/A	MEKNNQTNLEELIKKLENVPVPERTCNIDDETCESCSG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.