NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211704_1046783

Scaffold Ga0211704_1046783


Overview

Basic Information
Taxon OID3300020257 Open in IMG/M
Scaffold IDGa0211704_1046783 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000508 (ERX555911-ERR599048)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)641
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7887Long. (o)-17.9142Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033075Metagenome178Y
F078838Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0211704_10467831F078838GGAGGMAFNTYIDDRAMIPILLEHDWMIWKDTWTDCSYETYMALKKMMRHTG
Ga0211704_10467832F033075GGAGMTHNNPMQDVYKCVLSTYNPLHIKDILIHGASRKAIHHKSEEDIIGFYANHNEGIHHELLDSKEKWFKLYAFMQYCYNQTNKTEQDQYEFLRDVVWLYIDKVADELGDQYKLHAKTRKEVEDEVLQIDLDIRKAQLNVIDGGKK

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