Scaffold Ga0211696_1007615

Overview

Basic Information

• Taxon OID: 3300020252
• Scaffold ID: Ga0211696_1007615
• Source Dataset Name: Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX555968-ERR599022)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1307
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.1885
  • Long. (^o): -43.2831
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033075	Metagenome	178	Y
F078838	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211696_10076153	F078838	AGGAGG	MPFNTYIDDRAMIPILLEHDWMIWKDTWTDCSYETYMALKKMMRHTGNAMPMV
Ga0211696_10076155	F033075	AGGAG	MTQANPMQDAYEHILKSYNPLEIKDILLHGASRKAIKHKDADDIVSYYADHNEGIHHNLLDAKFEYCRSYLLCQAAYNRSEKTHEDQFFFLRDVVWLYIDAVADELGDEYKLHTTDRQTIEDEVLKIELDMRKKQLKVIDGGKS