NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211654_1007964

Scaffold Ga0211654_1007964


Overview

Basic Information
Taxon OID3300020247 Open in IMG/M
Scaffold IDGa0211654_1007964 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1768
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084340Metagenome / Metatranscriptome112Y
F095604Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0211654_10079643F095604GAGMKEADEAARALRKLQELTDKYSSTEMDADQLKASISERINATEELKEIMRKAMEAKKENDSYHQWRASD
Ga0211654_10079644F084340N/AMPIFAQKCPDMTKITFTEAEHPAALHQQDINACVHHIRDAVVDYLESDVLTPGEFVSAIKTALGDSLTHHQSRANLLKDAEQLLTNNISSGFRLDELQE

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