Scaffold Ga0211654_1001426

Overview

Basic Information

• Taxon OID: 3300020247
• Scaffold ID: Ga0211654_1001426
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4350
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2476
  • Long. (^o): -85.3343
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002249	Metagenome	578	Y
F004650	Metagenome	429	Y
F056889	Metagenome	137	Y
F068144	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211654_100142610	F068144	GAGG	MWHEDKKHYLLSGQQLNQILAMLQMISDRNPDIEKLNEFIRNLKDLRAYNDILDEFIFSNQKKLPDEIKPVGERDSMTLDEMLAGLELRLMDERDKDNGKN
Ga0211654_100142612	F056889	N/A	MKNLSHEEQITLILIGIAIGIGIGFVLKVFLDTYYLLQNL
Ga0211654_10014263	F004650	GAGG	LVYRLNSIKAELDGDTIQYDNGESIELVTYLSMYDWDNPAPHSTEDAFKIGDVVNKYGITTEEIEEEARLLNG
Ga0211654_10014265	F002249	N/A	MRYGKKYKSYPYTIPINHKALQHTKIKELQVRMMKWSAWVKDERIPNKEVDKDKWQDRFTFSLRCQKRAGELTKGELEQLNHYWKIYDEKRLT