NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211654_1000268

Scaffold Ga0211654_1000268


Overview

Basic Information
Taxon OID3300020247 Open in IMG/M
Scaffold IDGa0211654_1000268 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10233
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002430Metagenome / Metatranscriptome560Y
F003073Metagenome / Metatranscriptome509Y
F007346Metagenome / Metatranscriptome353Y
F032478Metagenome / Metatranscriptome180N
F061818Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0211654_100026810F007346GAGGMNDNEIRGIRLSQALNWSGQDIFEVAAAAFEDANYHSFNEVFYAAWMEHQKELEDG
Ga0211654_100026811F002430AGGAGMTLKLPKKQVNAILVALDAEIEMQLGGRPVDWESFPEVAAMMMAYYTTRCKFEEDDCNE
Ga0211654_100026812F061818AGGAGMTKSQEFWAWINQCPDGVYVNHDFTDDEDNQKIHVFGFAVPKENDNDDT
Ga0211654_100026820F032478AGGMYWTVGIKMDGISGVYDVHPQPLEQPIWNHAVEHALDMAQAMYPDKHIELEFVKEFDSA
Ga0211654_10002689F003073AGGAGMAKKLENMTTDERIAYWESEREKARIQRRNRIAKLSMDQRAAVIDVNKLLDKVLDVALYPDMGGIRMVSAFDLQELYDAMDTLQFQFNLRD
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