Scaffold Ga0211731_10088244

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_10088244
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31689
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (84.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014621	Metagenome	261	N
F038592	Metagenome	165	Y
F049488	Metagenome	146	N
F065535	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_1008824415	F038592	AGGAGG	MKNFDSWLCNDPSIDDGQELIDDRANELIKTTYRPSILINDAISEFTFKENQQMAEFASENDMTGLGNYIYLKAYDFANKLANQQAEHEFFNGDLG
Ga0211731_1008824417	F065535	AGG	MTFNEQIDSLLNKQKEVDYILVTETIKEYLVTWPSNVDSQLWNHRLESLLKRIDEKFGKGDNS
Ga0211731_1008824421	F049488	AGGA	MTKGVFFVITMWIVFCGFIIYLTEVSRKEEVFKFNCNNLIGGWHPDIPKKFAELCAEAKKERNDR
Ga0211731_1008824430	F014621	GAG	MTLIHWLMSILFIELIAVFTVAFLAFSGFFTEMRMLSKIGIFVMTMGLMVQVMRSLHYFEYGAYPIDTLFPLWITKDIGASIIIFDLALLHFRKAK