Scaffold Ga0181604_10061730

Overview

Basic Information

• Taxon OID: 3300020191
• Scaffold ID: Ga0181604_10061730
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2136
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005591	Metagenome / Metatranscriptome	395	Y
F028971	Metagenome / Metatranscriptome	190	Y
F087019	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181604_100617301	F087019	N/A	IGELIGLAFVIGFMLFCIAGVGLILADKNYDNKRKDD
Ga0181604_100617304	F028971	GAG	MEQEQGETYMVDIKDTELTPMTKAEYRAWEDYVTKYNEDNPKHPICYELTWNKDEYKVKLLDLKVDREN
Ga0181604_100617305	F005591	GGAGG	MNLYFKSTTLDKQIGWTWKDMDKAYWDTWIPKKSDIKIITRLNKEQKKQVLDELWEDLQSAIQFTRDRNNARRRQKRLDKKSQT