NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194118_10030928

Scaffold Ga0194118_10030928


Overview

Basic Information
Taxon OID3300020190 Open in IMG/M
Scaffold IDGa0194118_10030928 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3801
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.0012Long. (o)29.8102Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020890Metagenome / Metatranscriptome221Y
F090331Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0194118_1003092811F020890N/AMDSFDDIQIEDFSSFDFVEEMNEGIFEAEEEDDDKSFNTLLNSKIDF
Ga0194118_100309282F090331N/AMSIGLGITIYAALVAVISSLMVYYFRVMYPRDEQQLKEKSNDRLQ

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