Scaffold Ga0206130_10067987

Overview

Basic Information

• Taxon OID: 3300020187
• Scaffold ID: Ga0206130_10067987
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2337
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035835	Metagenome / Metatranscriptome	171	Y
F042800	Metagenome	157	Y
F068853	Metagenome	124	Y
F073265	Metagenome	120	Y
F085723	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206130_100679871	F068853	N/A	MTLRTYNKSQLAILCTVKDELKHYLGEEINHNPEGDAEALTELETRLANWLTVGGGGAWLRSLPEVQEEFTK
Ga0206130_100679872	F042800	N/A	MNKLTLHVYKSTPFGLERVNDHPLTIAEAKAMLRANPNLAVRDAQSASYKVLHDWQDEEPTDKEIAVARNFSTGIIIALVASVALFIAELLTR
Ga0206130_100679873	F073265	N/A	MTKTQAYIRASKFYLSEELPSDFFELDEQEVTDFIQDNAWQPFEQWEPRGIWDLIEDIASEFLEVSNLNQ
Ga0206130_100679874	F085723	N/A	MLTKLKFNPLHPTLNAMQLQAAYQLSEVEGWDVEGKTAFKDGLTLHLHENGNALCKPPEGFNQ
Ga0206130_100679877	F035835	N/A	MTNRQIDTVTGITDGAMRTLLRSALRPIWRRCSRRTFINSVRYQATNPKTGRQWNVIDCIDCKRVMGVSEKERRPLKNGGLSKKPRSVFEVHHIIGVTPLGDIRETLGEHFHSLIYGKMAILCVACHAKETAEQTKQRNLTKGLDKSQ