Scaffold Ga0206131_10230584

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10230584
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 880
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002915	Metagenome / Metatranscriptome	521	Y
F004166	Metagenome / Metatranscriptome	450	N
F093220	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_102305841	F093220	N/A	LFLNASNVFIDKAYANEWDVVVELNKSNVKIDRMQENLNIIDKNVRVIEKIVDTAENNLIVAINNACNVKTN
Ga0206131_102305842	F004166	N/A	MKKLFLLFLLVPLISCSDYQTNNSWGSYATNKETQKQEFWFVSYKTREECVADMSWQLEGEDDPNKKRISILHTKPYGCHFMSNNKWLSMYYYLVYRDEGMGCLWESSNPNVRIKYSVTLKTFENVPEQGRCILGD
Ga0206131_102305843	F002915	AGG	MKKLFLLILIIPILGQSKEVFTNDQGLKIEYVKPSVSCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICSDQNMIKQLEKK