Scaffold Ga0206131_10068248

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10068248
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2228
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024563	Metagenome / Metatranscriptome	205	N
F046311	Metagenome	151	Y
F056584	Metagenome	137	Y
F074735	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_100682484	F024563	AGGAG	MKIEYTTKKDLIKQIEEKGFKPLSMNATIQDMKTYLGALNVEATLKKAAK
Ga0206131_100682485	F074735	GAGG	MNEKKLTKQELIKAIEGYEKVLANKSMIKTLSKFMLGAYIVRLGRLNAELKRRK
Ga0206131_100682486	F056584	AGGAG	MATLTVSSDNNNGVVVLKGKMSWIKKRAVAYRNKGFNVLITWEQK
Ga0206131_100682487	F046311	GGAG	MRTPQQQKNHEAWLRQRARIIRYLNENEMIVFFLLGLSILFMVGCLAVVSA