Scaffold Ga0206131_10002595

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10002595
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21653
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (81.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014372	Metagenome / Metatranscriptome	263	Y
F082526	Metagenome	113	N
F096901	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000259522	F096901	GGAG	MWTLWIVSSVIYSIEPKYTRYEEFETAMSCHIEQAVLETEFIQNEKAFCINE
Ga0206131_1000259534	F082526	AGGA	MKINEVTEEVIPVNNTEHAVERLKVAAELCSKMGDQPILYRAMHGSTYHGGAKNNLIQKITNPARKGVMGNHNPIQTAVIKGLNIASPAQATTVAPKSNSNYFGTNHIIIPGGDVKAYWNPDIDDLGGFKGYDPQYAQGAGPSGGTISRRDEPEGEELQKILSGYQKGIPSYSQHKGEVILDTEFYYMLNLESFLSKFGGKKVKELITIDNRKSFAAIKQDLLVDKFKTYRDVGWYLANPATNMMKWIASKEKERQ
Ga0206131_100025959	F014372	AGGAG	MLHTIEDLIHRINLMKDKAILLHRVRNEFAEISYKEYDKTTCQNLIADIQAIARGIANDTEGDEIKTEMDEWKK