Scaffold Ga0206131_10002018

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10002018
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25249
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (8.16%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F001913	Metagenome / Metatranscriptome	618	Y
F006002	Metagenome / Metatranscriptome	384	Y
F011526	Metagenome / Metatranscriptome	290	Y
F013571	Metagenome / Metatranscriptome	270	Y
F030762	Metagenome / Metatranscriptome	184	Y
F047678	Metagenome / Metatranscriptome	149	N
F057689	Metagenome	136	N
F063092	Metagenome / Metatranscriptome	130	Y
F085360	Metagenome	111	N
F100687	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000201813	F011526	N/A	MRNEEMIATVECYIHHRTDKEIRIARPVNSNQFFLLTKAYENCKGFFIKH
Ga0206131_1000201816	F057689	N/A	MKQKKHTVNERLALVEKVTYKLALEVQAIIKAINLTREEDKKETE
Ga0206131_1000201817	F063092	N/A	MVEDRLIWNGVKQRITSKMSNEDFKTMCRLHAKYFDHKYHQPCTCNKTRLRQWIEQLNDKLI
Ga0206131_1000201823	F047678	N/A	MNNKQIEQISGAIITSFVNLHFLEEAKASGLFRHRTKNNVKKTIDDLIEIETNYYQKVEEVDEKDLGDKLVANKLEFVKWLLNEFDFNDLTKIQEVCIAYTKDKEQLVAASDKINIEHGAEIIE
Ga0206131_1000201825	F100687	N/A	MHTKLKNIIKIIQPEFESEDSWYNEQLPNEVSLYLDTDEHLIDLHLKDDVLHTNIWIEEEEYELTEEDAEFIYKHLNNLLDNEIELTKRYYQEEKFEQNRY
Ga0206131_1000201830	F085360	GGA	MAKIKKKLKPFKNCDHKAQSYCFNKGFMITLEPAGANYKVKYQRGHSVQYYMQGKEFNLQDAYQSIWDLYTKIYNYDKQKENESKTNS
Ga0206131_1000201837	F001728	N/A	MNDIELRPTDKKDHYRLFINGVDVTGEQERSLFRHIIQTIDNGIDN
Ga0206131_100020184	F006002	N/A	MSRAVYCKCKNTYSIECKTNQGKECNAPEYWKQGIGRINAIEDEN
Ga0206131_1000201843	F013571	N/A	MEINLILLVPDAMMVGWQYYRPDDNFNYSEVNIFLFFGQLQIRWNKDE
Ga0206131_1000201845	F030762	N/A	MQDIKIGAINLLTFTVSFSNVEQWLKIALLVVSIVYTVLKIFKLKEPNEAK
Ga0206131_100020187	F001913	N/A	MIKEILDLLKDTDCKAEVVQLAKGKNKFPDSFKEIFTRQKQDIRWKK