Scaffold Ga0206131_10000562

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10000562
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51343
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (65.66%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014448	Metagenome	263	Y
F020603	Metagenome	223	Y
F028310	Metagenome	192	Y
F028622	Metagenome	191	Y
F040096	Metagenome / Metatranscriptome	162	N
F043084	Metagenome	157	N
F066804	Metagenome / Metatranscriptome	126	N
F067117	Metagenome	126	N
F080239	Metagenome	115	N
F086161	Metagenome / Metatranscriptome	111	N
F092711	Metagenome	107	N
F094106	Metagenome	106	Y
F098057	Metagenome	104	N
F105907	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000056213	F028622	N/A	MLDDDRGSLDLTKQIDELNKKVKNLDGLEKIHKKTNGDLRLHILKLDREIYELKKNMAIEKENHQINIMEKDNEIGRLIKKITEK
Ga0206131_1000056214	F020603	AGGAG	MINRLLLIIFCLFLSNCSTYKPLINPETSKDKHNGDVIAGNYWKDLHACRYIHEKNTGIVPKTLGLSDEKMFVKKCMENYGYSILR
Ga0206131_1000056215	F092711	GGAG	MVQLEITLTGRSKSFTGETLQDCAKQFFDEFGEASKEVVKCQTFEVNNPTEFLIVGGNESCLGYLKQMQQGVIDDK
Ga0206131_1000056219	F067117	N/A	MNTKTKEKMKMLQIPVTEKQFDTLKEKADKEKRSLPNSILIILEPYMKAK
Ga0206131_100005622	F086161	GGAG	MDNHKTFVLNTEDTFNKLQEASEKKAETLFRYRKLEKSEKIILAKLKNELRLNHDKISQTELTDEAYRQTKYKEWLIAYTQAEKDFTLSKDYYNNLIALKDMRITEESSARYLINKK
Ga0206131_1000056220	F080239	GGAG	MMIMNIKKMKMEQILNKFYVNRIVGKVFSSLNLENTSSLKDLLETKSDIVYKKFSGVINPPILDRWNWLVVIPQQFNRYANPCNLLTVLVPPISIIKNYLLLIKNNIKKSLIIKKEKHEH
Ga0206131_1000056223	F014448	AGGAG	MAKAKDINIYKIFSQTYNKSMFGFMDFGELKLIPKVKTIRQTTPKVSMGSHVDKFLKERQLTLVVNNG
Ga0206131_100005625	F066804	N/A	MLISYLEFKLNKEIAYEDTFEKDKEIRKQYDEYVKQTKTKEEKMLDKPIYFNVYKVESDNPKAPTFSWNGFTVKEDIVIKAGTKIDMTFWGNSTNQKDGKPNPHLKISNHVPREDKGGVSNRDINYPTKEQVAQQDNNYLDDDINF
Ga0206131_1000056259	F040096	AGGA	MEHTNGFKMIEIKFQGESYNGFYKVTRKGVVTIETRSDIPVKPYDKVSIGVEELIVQKIQVYSNRAEITCENPNTSDIVKANKTLKKLTKSEPKKKNILEQLMEKDTDGESV
Ga0206131_1000056283	F043084	AGG	MDSFIPTHLAKTKEELIEIILKQDLEIQKLNNLNKFIKSKLEESLKGNITIDPIVNRIIKKHLDRHKEGMDNFGKTMSQNTKPFKHWVKEAQEESMDFILYLEKTLNKD
Ga0206131_100005629	F098057	GGAG	MTLDQIVKMQSIIDKRAIRSDTLEFLNQTRYSDSKKANIRFGDMHIDHFLTVVSNDFININNGEEKEKSFHEMLEKVKKKIIKEFSHGNH
Ga0206131_1000056291	F028310	GGAG	MAEKSIEDIYRDIENEVEEDCFDREDIRLKDQEPYAIVGKSMSGNIILKVGDELGYDVTKSLTFPEALKLINELTVAVINRYAK
Ga0206131_1000056296	F094106	AGGA	MTKLGREIRVKFIYTDELLRKILNNPTKEHLYDMRDKFAKKETIKFNPFDKPAFEKELLTFSNTFKFFTYKDIVETLKDYKEFTILEYRITDNNDDAFNRKEYGRCWACDISGIVIDLSLERYLKKEKEIYHIEKTKAGSKYPVKRVNYWGKDI
Ga0206131_1000056298	F105907	GGAG	MDIIKLEEHYGRPSEFALTFTMEAIKSEVVSFWEKVQNDEIIGEKKKYLQALFNLNNKLVEKYNSKGGDATGYYMEWVDEKPYSVSLSGLIN